Communication algorithms, tailored for molecular dynamics simulation on d-meshes, are evaluated in terms of communication efficiency. We showed that d-meshes can be used as a communication upgrade of existing molecular dynamics simulation platforms and can be successfully applied to perform fast molecular dynamics simulation.
COBISS.SI-ID: 3971354
We have published a research article in the prestigious scientific book describing fast parallel integration algorithms for molecular dynamics simulation. We have described into details symplectic molecular dynamics algorithms for analytical solution of molecular dynamics integration equations as well as different PC cluster topologies for fast parallel computation of molecular dynamics simulation.
COBISS.SI-ID: 4176922