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Projects / Programmes source: ARIS

Optimization strategies in biological and artificial microfluidic systems

Research activity

Code Science Field Subfield
1.02.07  Natural sciences and mathematics  Physics  Biophysics 

Code Science Field
B002  Biomedical sciences  Biophysics 

Code Science Field
1.03  Natural Sciences  Physical sciences 
Keywords
Cilia, Low Reynolds number hydrodynamics, Optimization, Microswimmers, Biomimetics, Microfluidic pumps
Evaluation (rules)
source: COBISS
Researchers (7)
no. Code Name and surname Research area Role Period No. of publicationsNo. of publications
1.  13497  PhD Dušan Babić  Physics  Researcher  2013 - 2016 
2.  33744  PhD Maryam Nikkhou  Physics  Researcher  2014 - 2016 
3.  08851  PhD Igor Poberaj  Physics  Researcher  2013 - 2016 
4.  18142  PhD Andreja Šarlah  Physics  Researcher  2013 - 2016 
5.  36558  Tinkara Troha  Physics  Researcher  2015 - 2016 
6.  21609  PhD Andrej Vilfan  Physics  Head  2013 - 2016 
7.  18275  PhD Mojca Vilfan  Physics  Researcher  2013 - 2016 
Organisations (2)
no. Code Research organisation City Registration number No. of publicationsNo. of publications
1.  0106  Jožef Stefan Institute  Ljubljana  5051606000  18 
2.  1554  University of Ljubljana, Faculty of Mathematics and Physics  Ljubljana  1627007 
Abstract
Within the scope of this project we will solve a number of optimization problems in low Reynolds number hydrodynamics. The purpose is twofold: first to understand the swimming of microorganisms and the functioning of other cilia, as we know that they have in many cases evolved to work close to the theoretical optimum. We will also investigate the ideal forms of a surface-driven microswimmer. For that purpose we will use a scale-invariant formulation to keep the results as widely applicable as possible. We will also apply the optimization approach to understand the mechanism of symmetry breaking (between the left and the right half) in developmental biology. For microfluidic applications we will fabricate efficient artificial cilia and rotary pumps.
Significance for science
The scientific impact of this project is threefold. First, we solved some very fundamental problems in low-Reynolds number hydrodynamics, which is a contribution to the basic science. Second, the project brought new understanding into the biology of swimming microorganisms, in particular into the way how they have evolved for energetically efficient swimming. In the case of Kupffer's vesicle we were able to elucidate the mechanism of body asymmetry establishment in a model organism (zebrafish), however we anticipate that the detection mechanism is homologous in mammals including human. We were thus able to provide an answer to an important biological question (the mechanism of flow detection) that could not be answered with experimental means alone. Finally, we studied a number of phenomena in artificial colloidal systems (synchronization, propulsion of swimmers and microwheels, self-assembly) which are, besides basic science, also relevant for microfluidic applications.
Significance for the country
Research within this project helps bridge the gap between basic, curiosity-driven research and applied physics, particularly microfluidics. It helped strengthen the position of the J. Stefan institute and Ljubljana University in both fields. Highly visible publications and invited conference talks also crucially contribute to the reputation of both institutions and of the science carried out in Slovenia as a whole. Some members of the project team already take part in a European FP7 training network and a COST network, and the successful completion of this project will further strengthen our chances to compete for EU and other international funding. Finally, the research is tightly integrated into the teaching process, both at the undergraduate/Master level and in form of PhD training. The project also serves the promotion of products by two collaborating spin-off companies. Because these products are targeted mainly at the research community, scientifically visible results, publications in high-ranking journals and presentations at conferences (along with commercial exhibitions) are their primary advertising channel.
Most important scientific results Annual report 2013, 2014, 2015, final report
Most important socioeconomically and culturally relevant results Annual report 2013, 2014, 2015, final report
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